What'sNEW April - July 2016
Why NASA still believes we might find life on Mars by Sarah Kaplan, The Washington Post, 30 Jul 2016. Thanks for the alert, Doron Goldberg. We disagree. Robotic instruments would be faster, cheaper and safer. Maybe astronauts later, when ready. Life on Mars! describes the Viking LR experiment. Bacteria... mentions extremophiles such as Mars might host. A fossil on Mars resembles one on Earth, but people don't seem to be able to recognize it, posted 28 Oct 2015.
Genes in Hiding by Gertraud Burger, Sandrine Moreira and Matus Valach, doi:10.1016/j.tig.2016.06.005, Trends in Genetics, online 22 Jul 2016: We then focus on a recently discovered system whose genetic information is hidden in an unparalleled way: by massive fragmentation and scrambling, as well as nucleotide substitutions and deletions. The molecular processes involved in deciphering these extremely 'mutilated' genes are intriguingly inventve, raising questions about how such a complex may have emerged and why it has persisted during evolution. A cell's deciphering arsenal is a new expression to us, but the processes it comprises reinforce our view that robust software management effects the deployment of genetic programs, which arrive whole or in few unsorted parts, and which may stay dormant until needed.Conserved Non-Genic Sequences, posted 2003, anticipates the deciphering arsenal? Robust Software Management... is a new, incomplete webpage. 14 Jun 2016: We discuss robust software management.
Homology, Genes, and Evolutionary Innovation, Princeton University Press, 2014. Does Microevolution Explain Macroevolution? is a topic under "Neo-Darwinism: The Current Paradigm". ...Examples for which gene and genome duplication may be related to innovations are rare, and instances for which a case can be made regarding a causal connection between genome duplication and innovations are even rarer. (p 209) Duplication Makes A New Primate Gene? has discussion and links related to gene duplication. Richard Hoover disputes some misconceptions about comets, 17 July 2016.
Salty Streaks of Flowing Water Could Morph Mars' Surface by Samantha Mathewson, Space.com, 13 Jul 2016. Thanks, Ronnie McGhee and Bob Sweeney. Life on Mars! is a related local webpage.
The Unseen, by Raffi Khatchadourian, The New Yorker, 20 Jun 2016. Thanks, John Bilon. Bacteria: The Space Colonists and Life on Mars! are related local webpages.
Now, following complicated lab procedures, geneticists from Edinburgh and Warsaw have observed interesting phenomena among tRNA genes that sometimes generate long, 3'-extended forms by read-through of the canonical poly(U) terminators. They propose that the genes have "housekeeping" roles, sustained at the proper level "due to targeting by the nuclear surveillance machinery." We see here more evidence for robust software management. Global analysis of transcriptionally engaged yeast RNA polymerase III reveals extended tRNA transcripts by Tomasz W. Turowski et al., doi:10.1101/gr.205492.116, Genome Res., online 20 May 2016.Introns... is a related webpage. Viruses... is all about HGT. Diversity-generating retroelements...., 28 Apr 2015. Recipient-initiated horizontal gene transfer, 7 Jul 2014. Gene Conversion is a topic under "Why Sexual Reproduction?" Robust Software Management... is a new, incomplete webpage.
Ancestral Tryptophan Synthase Reveals Functional Sophistication of Primordial Enzyme Complexes by Florian Busch et al., dio:10.1016/j.chembiol.2016.05.009, Cell Chemical Biology, online 09 Jun 2016. Thanks, Martin Langford, who writes, Early complexity supports panspermia.... Metazoan Genes Older Than Metazoa? and Genes Older Than Earth? are related local webpages.
Meteorite Contamination and "The Dog that Didn't Bark" [docx | pdf], from Moscow, 13 Jun 2016. Amino Acid Asymmetry..., ...Indigenous Microfossils..., Fossilized bacteria..., ...Indigenous Microfossils... and Contaminated Meteorite are some related local entries.
Interview with Anushree Srivastava for IARC, Centre for United Nations, Jun 2016. ...Analysis of Interstellar Dust and Fred Hoyle: Interviewed... have some background about the collaboration.
Enantiomer excesses of rare and common sugar derivatives in carbonaceous meteorites by George Cooper and Andro C. Rios, doi:10.1073/pnas.1603030113, PNAS, online 31 May 2016. Meteorite compounds hint at origins of life's asymmetry by Emma Stoye, Chemistry World, 31 May 2016. Amino Acid Asymmetry in the Murchison Meteorite! is a related local webpage. Thanks, Richard Hoover.
The insert was found to be present in 105 out of 110 fully black moths (wild caught in the UK since 2002) and absent in all (283) typica tested.... The probability density for the date of the carb-TE mutation event is highly skewed ...with a maximum likelihood at 1819, a date highly consistent with a detectable frequency being achieved in the mid-1840s. The carb-TE is a spectacular example of an adaptively advantageous transposon; its discovery fills a fundamental gap in the peppered moth story and furthers our appreciation of the mechanism underpinning rapid adaptation. A consensus on the general importance of transposable elements for adaptive evolution has yet to emerge. Over longer time frames, phenotypic effects of transposable elements may be obscured by imprecise excision that leaves a minimal trace of the transposable element while retaining the mutant (adaptive) phenotype. By contrast, we have shown that the carb-TE is young, approximately 200 years (generations) old, during which time it has gone from a single mutation to near fixation (regionally) to near extinction-driven by a pulse of environmental change. The report begins, "Disovering the mutational events that fuel adaptation to environmental change remains an important challenge for evolutionary biology. The classroom example of a visible evolutionary response is industrial melanism in the peppered moth (Biston betularia): the replacement, during the Industrial Revolution, of the common pale typica form by a previously unknown black (carbonaria) form, driven by the interaction between bird predation and coal pollution." Now we see that the dark variant emerged following the precise insertion of a specific large transposable element into a certain gene. This phenomenon supports cosmic ancestry and surprises standard darwinism. Coming from the peppered moth, beloved by darwinists, the example is especially ironic. The industrial melanism mutation in British peppered moths is a transposable element by Arjen E. van't Hof, Pascal Campagne et al., doi:10.1038/nature17951, p 102-105 v 534, Nature, 02 Jun 2016.'Jumping gene' took peppered moths to the dark side, University of Liverpool (+Newswise), 01 Jun 2016. 'Landmark study' solves mystery behind classic evolution story by Emily Benson, Science, 01 Jun 2016. Viruses and Other Gene Transfer Mechanisms and Neo-Darwinism... are related local webpages. email from Theodore Rigley prompts related discussion, 04 Jun 2016.
Thanks, Google Alerts. Horizontal gene transfer of pectinases from bacteria preceded the diversification of stick and leaf insects by Matan Shelomi et al., doi:10.1038/srep26388, Scientific Reports, 23 May 2016. Viruses and Other Gene Transfer Mechanisms is a related local webpage.
Rosetta's comet contains ingredients for life, ESA, 27 May 2016. Prebiotic chemicals–amino acid and phosphorus–in the coma of comet 67P/Churyumov-Gerasimenko by Kathrin Altwegg et al., doi:10.1126/sciadv.1600285, Science Advances, 27 May 2016. What'sNEW under "Comet Rendezvous" has more links about Rosetta. Thanks, George Nickas, Stan Franklin, Adam Klyce, Vitaly Mats and Steve Pike. The delayed recognition of the gene ...had a strange consequence: genetics had to be reconciled with the other major fields of biology as an afterthought. — Siddhartha Mukherjee, The Gene: An Intimate History, Scribner, May 2016. Censorship & Upcoming Royal Society Evo Meeting by Suzan Mazur, Huffpost Science, 25 May 2016.
Extensive horizontal gene transfers between plant pathogenic fungi by Huan Qiu et al., doi:10.1186/s12915-016-0264-3, BMC Biology, 23 May 2016. Thanks, Google Alerts. Viruses and Other Gene Transfer Mechanisms is a related local webpage.
email from Richard Hoover has more, with links, 18 May 2016. Comets... has background information. Fossilized Magnetotactic Bacterium in the Orgueil Meteorite describes more evidence from the same meteorite.
The protein, SBF, controls the expression of genes that are needed to begin the cell cycle, but it is different from the corresponding one in plants and animals. After an extensive phylogenetic-based classification of protein homologs, a team at Duke University concluded that fungi acquired SBF via a DNA virus. Punctuated evolution and transitional hybrid network in an ancestral cell cycle of fungi by Edgar M Medina et al., doi:10.7554/eLife.09492, eLife, online 10 May 2016; and commentary: Hijacked Cell Division Helped Fuel Rise of Fungi by Robin A. Smith, Duke University (+ScienceDaily), 9-10 May 2016. Viruses and Other Gene Transfer Mechanisms has links to many more examples. Thanks, Martin Langford.
Patching Holes in the Chlamydomonas Genome by Frej Tulin and Frederick R. Cross, doi:10.1534/g3.116.029207, G3, online 10 May 2016. Conserved Non-Genic Sequences is a related webpage.
Martian water on the boil, doi:10.1038/533011b, Nature, 4 May 2016. Life on Mars! is the related webpage.
The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity by Erik R. Hanschen et al., doi:10.1038/ncomms11370, Nature Communications, 22 Apr 2016. Metazoan Genes Older Than Metazoa? and Genes Older Than Earth? have more about genetic programs appearing much earlier than anticipated by darwinism. And, in the accompanying phylogenetic analysis of gene family evolution (right), bars to the left and right of the vertical axis denote the lost and gained gene families, respectively, relative to its parental node. Thus, the research also supports our contention that evolutionary advances come when whole genetic programs are acquired. Viruses and Other Gene Transfer Mechanisms has more about how whole genetic programs are acquired by HGT.
Templeton grant funds evolution rethink by Elizabeth Pennisi, v 352 p 394, Science, 22 Apr 2016. Evolution versus Creationism has more about the gridlock created by the two camps.
Cis-regulatory architecture of a brain signaling center predates the origin of chordates by Yao Yao et al., doi:10.1038/ng.3542, Nature Genetics, online 11 Apr 2016. Metazoan Genes Older Than Metazoa? lists over two hundred examples we have noticed since 1996, like the one four days ago, next below. Genes Older Than Earth? is a local webpage with a radical suggestion.
The Dynamic Regulatory Genome of Capsaspora and the Origin of Animal Multicellularity by Arnau Sebé-Pedrós et al., doi:10.1016/j.cell.2016.03.034, Cell, 21 Apr 2016. Evolution: Gene regulation in transition by David S. Booth and Nicole King, doi:10.1038/nature18447, Nature, 23 Jun 2016. ...Many 'animal' genes pre-date animal origins. Metazoan Genes Older Than Metazoa? and Genes Older Than Earth? are related local webpages.
Interstellar grains seen by the Cassini spacecraft lend support to the old panspermia hypothesis by astrobiologist Dirk Schulze-Makuch (pictured), AirSpaceMag.com, 21 Apr 2016. Most interstellar particles captured by Stardust are complex organic compounds, 27 Apr 2000. Hoyle and Wickramasinghe's Analysis of Interstellar Dust is a related local webpage. ...You need sceptics especially when the science gets very big and monolithic — James Lovelock interviewed by Leo Hickman, The Guardian, 29 Mar 2010. Gaia has more about Lovelock.
The presence of clathrates in comet 67P/Churyumov-Gerasimenko by Adrienn Luspay-Kuti, doi:10.1126/sciadv.1501781, Science Advances, 08 Apr 2016. Water ice, but what kind? Evidence for clathrates in 67P by Adrienn Luspay-Kuti, NASA, JPL, 19 Apr 2016. Comets: The Delivery System is a related local webpage. What'sNEW under "Comet Rendezvous" has all our links about Rosetta.
What Is the Tree of Life?, doi:10.1371/journal.pgen.1005912, PLoS Genet, 14 Apr 2016. The Tree of Life has links to more under What'sNEW there.
NASA Really Is Trying to Grow Potatoes on Mars by Ryan Dube, The Wall Street Journal, 12 Apr 2016. Can Plants Grow with Mars Soil?, Gary Jordan, ed., NASA Johnson Space Center, updated 15 Oct 2015. Life on Mars! is the related local webpage.
Viruses and Other Gene Transfer Mechanisms has related information and links.
A distinct and active bacterial community in cold oxygenated fluids circulating beneath the western flank of the Mid-Atlantic ridge by Julie L. Meyer et al., doi: 10.1038/srep22541, Sci. Rep., online 03 Mar 2016. How deep does life go? by Diana Kenney, Marine Biological Laboratory (+EurekAlert), 06 Apr 2016. Bacteria... has more about the capability of prokaryotes to persist and even thrive in all manner of harsh environments. Life on Europa...? has links about moons of Jupiter and Saturn with deep, ice-covered oceans.
Human Genome Search discusses a relevant research project. New genetic programs in Darwinism and strong panspermia suggests how this news may support cosmic ancestry. Viruses and Other Gene Transfer Mechanisms has related information and links.
"The recent structural models of the spliceosome in different steps of the splicing reaction represent a turning point for the field, reminiscent of the change that occurred when structures of the protein-synthesizing machine—the ribosome—were resolved in 2000.... Now, dozens of ribosome and ribosomal subunit structures are determined every year. With the advent of high-resolution cryo-EM, the same is likely to be true for the spliceosome over the next decade." As this exploration proceeds, one would expect to notice abundant corroboration for the standard theory of evolution. So far, we don't see it. The human splicesome has some components closely orthologous to those in yeast, and others that look wholly different. Either way, the complex mechanisms and the lengthy programs behind them have no plausible, reconstructable origin, as darwinism would require. In cosmic ancestry, splicing and editing are essential for evolution. Instead of how, we wonder if they originated. Without the big bang, what's the evidence? Molecular architecture of the human U4/U6.U5 tri-snRNP by Dmitry E. Agafonov, Berthold Kastner, Olexandr Dybkov et al., doi:10.1126/science.aad2085; and commentary: A Big Bang in spliceosome structural biology by Jamie H. D. Cate, v 351, Science, 25 Mar 2016.Introns... is the main related local webage. | ||||||||||||||||||||||||||||||||||||||
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